Motif View

Internal ID 17907993
Source Database TransTermHP TERM 115
Feature Type terminator
Name
Rho-independent transcription terminator TERM 115
Sequence GAATGACTGGAAACAGGCATTC
Look for more occurrences
Start 447402
End 447423
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa C20 genomic scaffold adgfy-supercont1.2, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCGATCTGACAAAAA(5' tail) GAATGCCTG(5' stem) TTTC(loop) CAGTCATTC(3' stem) GCGTTACGTGCACCG(3' tail). Confidence: 90.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685