Motif View

Internal ID 17907345
Source Database TransTermHP TERM 25
Feature Type terminator
Name
Rho-independent transcription terminator TERM 25
Sequence CGCCCCGAGGGGCG
Look for more occurrences
Start 75842
End 75855
Strand -
Genomic Context
Replicon Pseudomonas sp. LAIL14HWK12:I5 F629DRAFT_scaffold00020.20_C, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCTGAAACGAAAAAA(5' tail) CGCCC(5' stem) CTCG(loop) GGGCG(3' stem) TTTTTTTGTGCCTGG(3' tail). Confidence: 100. opp_overlap 75824 75842, overlap 75834

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685