Motif View

Internal ID 17902551
Source Database TransTermHP TERM 78
Feature Type terminator
Name
Rho-independent transcription terminator TERM 78
Sequence TGCCGCCGCCAGGGCGGCA
Look for more occurrences
Start 363178
End 363196
Strand +
Genomic Context
Replicon Pseudomonas sp. PAMC 25886 ctg7180000004495, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCCAAGCCCCAGGGA(5' tail) TGCCGCC(5' stem) GCCAG(loop) GGCGGCA(3' stem) TTTTTTGACCAGAGG(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685