Motif View

Internal ID 17901142
Source Database TransTermHP TERM 11
Feature Type terminator
Name
Rho-independent transcription terminator TERM 11
Sequence GGCTGGCGCAGTGGCCAGCC
Look for more occurrences
Start 20915
End 20934
Strand +
Genomic Context
Replicon Pseudomonas stutzeri NF13 contig00054, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGAGTGACGCGAAAG(5' tail) GGCTGGC(5' stem) GCAGTG(loop) GCCAGCC(3' stem) TTTTTCATTCGGCGT(3' tail). Confidence: 95. opp_overlap 20914 20915

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685