Motif View

Internal ID 17897984
Source Database TransTermHP TERM 11
Feature Type terminator
Name
Rho-independent transcription terminator TERM 11
Sequence GGCGTCGGAAGACGCC
Look for more occurrences
Start 26773
End 26788
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa CF_PA39 scaffold50, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCCGGATATGAAAAA(5' tail) GGCGTC(5' stem) TTCC(loop) GACGCC(3' stem) CTTTCCTCAGTACCA(3' tail). Confidence: 100. opp_overlap 26773 26772

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685