Motif View

Internal ID 17897536
Source Database TransTermHP TERM 26
Feature Type terminator
Name
Rho-independent transcription terminator TERM 26
Sequence GGGAGCCCTTAGCGGCTCCC
Look for more occurrences
Start 138643
End 138662
Strand -
Genomic Context
Replicon Pseudomonas sp. URHB0015 N526DRAFT_scaffold00016.16_C, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments ACCGGACAGAAAAAA(5' tail) GGGAGCC(5' stem) GCTAAG(loop) GGCTCCC(3' stem) GTCTTTTCACTTCGC(3' tail). Confidence: 100. opp_overlap 138642 138640 138643

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685