Motif View

Internal ID 17893918
Source Database TransTermHP TERM 1054
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1054
Sequence GCCACCTGAGCCGCAAGGGCCAAGGTGGC
Look for more occurrences
Start 4126955
End 4126983
Strand +
Genomic Context
Replicon Pseudomonas monteilii SB3101, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CATGAAATGAAAAAA(5' tail) GCCACCTGAGCC(5' stem) GCAAG(loop) GGCCAAGGTGGC(3' stem) TTTTTCGTATAAGGT(3' tail). Confidence: 95. opp_overlap 4126955

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685