Motif View

Internal ID 17892557
Source Database TransTermHP TERM 472
Feature Type terminator
Name
Rho-independent transcription terminator TERM 472
Sequence GGCCGCCTAGCGGCC
Look for more occurrences
Start 2028346
End 2028360
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa LES431, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TCGTTCTCCGGAAAA(5' tail) GGCCGC(5' stem) CTA(loop) GCGGCC(3' stem) TTTTTTGTTTTCTCC(3' tail). Confidence: 100. opp_overlap 2028346, overlap 2028339

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685