Motif View

Internal ID 17891343
Source Database TransTermHP TERM 144
Feature Type terminator
Name
Rho-independent transcription terminator TERM 144
Sequence GGCCCGCCTCCTTCGGATGGCGGGCC
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Start 602903
End 602928
Strand +
Genomic Context
Replicon Pseudomonas sp. TKP, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGTTGAGTTGAGAAA(5' tail) GGCCCGCC-TCC(5' stem) TTC(loop) GGATGGCGGGCC(3' stem) TTTTTTTGGCCTGCG(3' tail). Confidence: 100. gap 1, opp_overlap 602903

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685