Motif View

Internal ID 17891263
Source Database TransTermHP TERM 16
Feature Type terminator
Name
Rho-independent transcription terminator TERM 16
Sequence CCGGTCTCAAGGACCGG
Look for more occurrences
Start 55165
End 55181
Strand +
Genomic Context
Replicon Pseudomonas sp. TKP, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCTGTGTATAAAAAA(5' tail) CCGGTCT(5' stem) CAA(loop) GGACCGG(3' stem) TTTTTTACTGCGCAA(3' tail). Confidence: 100. opp_overlap 55165

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685