Motif View

Internal ID 17888878
Source Database TransTermHP TERM 201
Feature Type terminator
Name
Rho-independent transcription terminator TERM 201
Sequence GCCCGCTTCGGCGGGC
Look for more occurrences
Start 879848
End 879863
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa 62 genomic scaffold adgfr-supercont1.2, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGCACCGGTGTTCAG(5' tail) GCCCGC(5' stem) TTCG(loop) GCGGGC(3' stem) TTTTCATGGCCCCCG(3' tail). Confidence: 91.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685