Motif View

Internal ID 17888425
Source Database TransTermHP TERM 375
Feature Type terminator
Name
Rho-independent transcription terminator TERM 375
Sequence TGACCCGTCCGGCCCCGCCCGGCCGGGCGGGGCA
Look for more occurrences
Start 1965831
End 1965864
Strand -
Genomic Context Located within gene [P997_01780]
Replicon Pseudomonas aeruginosa 62 genomic scaffold adgfr-supercont1.1, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CAGCGTTCTCCACAA(5' tail) TGCCCCGCCCGGCC(5' stem) GGGCGG(loop) GGCCGGACGGGTCA(3' stem) ATCGGGACGGTTGGA(3' tail). Confidence: 91. overlap 1965832

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685