Motif View

Internal ID 17884754
Source Database TransTermHP TERM 670
Feature Type terminator
Name
Rho-independent transcription terminator TERM 670
Sequence CCCGGCTCAGGCCGGG
Look for more occurrences
Start 2916481
End 2916496
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa CF18 genomic scaffold adgfD-supercont1.1, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCAGGCAAAGAAAAA(5' tail) CCCGGC(5' stem) CTGA(loop) GCCGGG(3' stem) TTTTTCCTTAGAGGC(3' tail). Confidence: 100. opp_overlap 2916481, overlap 2916475

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685