Motif View

Internal ID 17884722
Source Database TransTermHP TERM 629
Feature Type terminator
Name
Rho-independent transcription terminator TERM 629
Sequence GGGTTCCGGCGCCAGCCGGAACCC
Look for more occurrences
Start 2705137
End 2705160
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa CF18 genomic scaffold adgfD-supercont1.1, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CTGATCCTGGCCCAG(5' tail) GGGTTCCGGC(5' stem) GCCA(loop) GCCGGAACCC(3' stem) TTTTCCATCCGACAC(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685