Motif View

Internal ID 17884560
Source Database TransTermHP TERM 351
Feature Type terminator
Name
Rho-independent transcription terminator TERM 351
Sequence GCCGCACAGCCTGTAAGGGCGTGCGGC
Look for more occurrences
Start 1374173
End 1374199
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa CF18 genomic scaffold adgfD-supercont1.1, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TTCCGACGTGGAAAA(5' tail) GCCGCACAGCCT(5' stem) GTAA(loop) GGGC-GTGCGGC(3' stem) TTTTCTTTAGCGCCT(3' tail). Confidence: 100. gap 1, opp_overlap 1374173, overlap 1374168

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685