Motif View

Internal ID 17881052
Source Database TransTermHP TERM 41
Feature Type terminator
Name
Rho-independent transcription terminator TERM 41
Sequence GGCCGGCATTCGCCGGCC
Look for more occurrences
Start 132419
End 132436
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa UDL genomic scaffold adgeV-supercont1.2, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGCGAGAATGAAAAA(5' tail) GGCCGGC(5' stem) ATTC(loop) GCCGGCC(3' stem) TTTTTCGTGGATCGC(3' tail). Confidence: 100. opp_overlap 132419 132413 132412

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685