Motif View

Internal ID 17878291
Source Database TransTermHP TERM 5
Feature Type terminator
Name
Rho-independent transcription terminator TERM 5
Sequence CATGGCGTTACGCTATCG
Look for more occurrences
Start 62835
End 62852
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa U2504 genomic scaffold adgfx-supercont1.8, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CAAGGAAATAAAAAA(5' tail) CGATAGCG(5' stem) TAA(loop) CGCCAT-G(3' stem) ATCCGCAGGGCTTCC(3' tail). Confidence: 95. gap 1, overlap 62836 62838 62840

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685