Motif View

Internal ID 17877489
Source Database TransTermHP TERM 58
Feature Type terminator
Name
Rho-independent transcription terminator TERM 58
Sequence GCGCCGGGCGGCGCCCGGCGC
Look for more occurrences
Start 355039
End 355059
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa 19660 genomic scaffold adgew-supercont1.4, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGGAATGAACCCACC(5' tail) GCGCCGGGC(5' stem) GGC(loop) GCCCGGCGC(3' stem) TTTCTTCCCGCCACA(3' tail). Confidence: 100. opp_overlap 355033 355037 355034

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685