Motif View

Internal ID 17877076
Source Database TransTermHP TERM 97
Feature Type terminator
Name
Rho-independent transcription terminator TERM 97
Sequence CCCGGCTCAGGCCGGG
Look for more occurrences
Start 511473
End 511488
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa 19660 genomic scaffold adgew-supercont1.2, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCAGGCAAAGAAAAA(5' tail) CCCGGC(5' stem) CTGA(loop) GCCGGG(3' stem) TTTTTCCTTAGAGGC(3' tail). Confidence: 100. opp_overlap 511473, overlap 511467

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685