Motif View

Internal ID 17877074
Source Database TransTermHP TERM 95
Feature Type terminator
Name
Rho-independent transcription terminator TERM 95
Sequence GAAAAACCCGGCTCAGGCCGGGTTTTTC
Look for more occurrences
Start 511467
End 511494
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa 19660 genomic scaffold adgew-supercont1.2, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CTTTTTCCAGGCAAA(5' tail) GAAAAACCCGGC(5' stem) CTGA(loop) GCCGGGTTTTTC(3' stem) CTTAGAGGCTCAGCC(3' tail). Confidence: 100. opp_overlap 511473, overlap 511473

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685