Motif View

Internal ID 17877071
Source Database TransTermHP TERM 92
Feature Type terminator
Name
Rho-independent transcription terminator TERM 92
Sequence GCCCCGCCCCGTGCGGGGC
Look for more occurrences
Start 498724
End 498742
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa 19660 genomic scaffold adgew-supercont1.2, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGACGCGTCGAACAA(5' tail) GCCCCGC(5' stem) CCCGT(loop) GCGGGGC(3' stem) TTTTTCTTGCCCGGC(3' tail). Confidence: 100. opp_overlap 498724

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685