Motif View

Internal ID 17874663
Source Database TransTermHP TERM 91
Feature Type terminator
Name
Rho-independent transcription terminator TERM 91
Sequence CAAGGCCCGCCTCCCGCAAGGGATGGCGGGCCTTG
Look for more occurrences
Start 367580
End 367614
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa S35004 genomic scaffold adgfR-supercont1.1, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GATTTCGCGCCATCC(5' tail) CAAGGCCCGCC-TCCC(5' stem) GCAA(loop) GGGATGGCGGGCCTTG(3' stem) TGCTATGGCGCCGGT(3' tail). Confidence: 100. gap 1, overlap 367583

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685