Motif View

Internal ID 17871645
Source Database TransTermHP TERM 34
Feature Type terminator
Name
Rho-independent transcription terminator TERM 34
Sequence GGCCCGCGCGTCCGCGCGGGTC
Look for more occurrences
Start 254747
End 254768
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa BWHPSA003 genomic scaffold adggi-supercont1.4, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AAGCGATACCCCCGA(5' tail) GGCCCGCGC(5' stem) GTCC(loop) GCGCGGGTC(3' stem) TTTCTTTCAGAGGCT(3' tail). Confidence: 100. opp_overlap 254738

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685