Motif View

Internal ID 17869783
Source Database TransTermHP TERM 248
Feature Type terminator
Name
Rho-independent transcription terminator TERM 248
Sequence CCGGCCTCTGAGCCGG
Look for more occurrences
Start 889098
End 889113
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa BWHPSA006 genomic scaffold adhwj-supercont1.2, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGGAGCCCAGGAAAG(5' tail) CCGGC(5' stem) CTCTGA(loop) GCCGG(3' stem) TTTTTTTGTGCCTGT(3' tail). Confidence: 100. opp_overlap 889097 889098

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685