Motif View

Internal ID 17868960
Source Database TransTermHP TERM 10
Feature Type terminator
Name
Rho-independent transcription terminator TERM 10
Sequence GGGCGCAACGGTCACGGCCGTTGCGCCC
Look for more occurrences
Start 16343
End 16370
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa BWHPSA006 genomic scaffold adhwj-supercont1.1, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGCAATCTGGAGGAA(5' tail) GGGCGCAACGGC(5' stem) CGTG(loop) ACCGTTGCGCCC(3' stem) TTCTTCGTTCAGGAG(3' tail). Confidence: 93. opp_overlap 16343 16340

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685