Motif View

Internal ID 17867140
Source Database TransTermHP TERM 1341
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1341
Sequence GGCCCGTCGTCGACGGGCC
Look for more occurrences
Start 5650184
End 5650202
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa BWHPSA009 genomic scaffold adggc-supercont1.1, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCGGTCCGTGCGGCA(5' tail) GGCCCGTC(5' stem) GTC(loop) GACGGGCC(3' stem) TTTGTCGCGGGCGGG(3' tail). Confidence: 93.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685