Motif View

Internal ID 17865542
Source Database TransTermHP TERM 295
Feature Type terminator
Name
Rho-independent transcription terminator TERM 295
Sequence GGGCATGTAACTCCATTTCCATGCCC
Look for more occurrences
Start 1214121
End 1214146
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa BWHPSA010 genomic scaffold adgfl-supercont1.1, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TCATTCAGCCGACAA(5' tail) GGGCATGTAA(5' stem) CTCCAT(loop) TTCCATGCCC(3' stem) TTTGTTTTTATCCCG(3' tail). Confidence: 93. opp_overlap 1214121

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685