Motif View

Internal ID 17865209
Source Database TransTermHP TERM 49
Feature Type terminator
Name
Rho-independent transcription terminator TERM 49
Sequence GGCCCGCGCGTCCGCGCGGGCC
Look for more occurrences
Start 359807
End 359828
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa BWHPSA011 genomic scaffold adgfg-supercont1.4, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AAGCGATACCCCCGA(5' tail) GGCCCGCGC(5' stem) GTCC(loop) GCGCGGGCC(3' stem) TTTCTTTCAGAGGCT(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685