Motif View

Internal ID 17862504
Source Database TransTermHP TERM 1078
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1078
Sequence GGCGTCGGAAGACGCC
Look for more occurrences
Start 4779541
End 4779556
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa BWHPSA014 genomic scaffold adgeT-supercont1.1, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCCGGATATGAAAAA(5' tail) GGCGTC(5' stem) TTCC(loop) GACGCC(3' stem) CTTTCCTCAGTACCA(3' tail). Confidence: 100. opp_overlap 4779541 4779540

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685