Motif View

Internal ID 17861741
Source Database TransTermHP TERM 616
Feature Type terminator
Name
Rho-independent transcription terminator TERM 616
Sequence TCCGCGTTAAACTGCGCGGG
Look for more occurrences
Start 2419173
End 2419192
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa BWHPSA015 genomic scaffold adggh-supercont1.2, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGAGAGAAGAAAAAA(5' tail) CCCGCGC(5' stem) AGTTTA(loop) ACGCGGA(3' stem) ATTGGCGGTCACGCT(3' tail). Confidence: 100. overlap 2419174

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685