Motif View

Internal ID 17854737
Source Database TransTermHP TERM 195
Feature Type terminator
Name
Rho-independent transcription terminator TERM 195
Sequence TAGGGCCCTCGGGCCCTG
Look for more occurrences
Start 536244
End 536261
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa BWHPSA022 genomic scaffold adgeq-supercont1.2, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TCGCGGAAACGAAAA(5' tail) CAGGGCC(5' stem) CGAG(loop) GGCCCTA(3' stem) TTTTCATCGATCACG(3' tail). Confidence: 91. opp_overlap 536244 536246, overlap 536239 536238 536246

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685