Motif View

Internal ID 17851735
Source Database TransTermHP TERM 1083
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1083
Sequence GGCGTCGGAAGACGCC
Look for more occurrences
Start 4814318
End 4814333
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa BWHPSA025 genomic scaffold adggk-supercont1.1, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCCGGATATGAAAAA(5' tail) GGCGTC(5' stem) TTCC(loop) GACGCC(3' stem) CTTTCCTCAGTACCA(3' tail). Confidence: 100. opp_overlap 4814317 4814318

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685