Motif View

Internal ID 17849817
Source Database TransTermHP TERM 313
Feature Type terminator
Name
Rho-independent transcription terminator TERM 313
Sequence CCATGCCCCCGGCGGAACGCCGCCGGGGGCATGG
Look for more occurrences
Start 1103021
End 1103054
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa BWHPSA027 genomic scaffold adgfz-supercont1.2, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CAGGCAAGAAACAGA(5' tail) CCATGCCCCCGGCGG(5' stem) CGTT(loop) CCGCCGGGGGCATGG(3' stem) GATCAGGACTGGGCG(3' tail). Confidence: 100. overlap 1103019 1103017

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685