Motif View

Internal ID 17846910
Source Database TransTermHP TERM 346
Feature Type terminator
Name
Rho-independent transcription terminator TERM 346
Sequence GCCCGGCCATCGAGCCGGGC
Look for more occurrences
Start 1293317
End 1293336
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa BL02 genomic scaffold adggf-supercont1.3, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments ACCCGCAGCGAAAGA(5' tail) GCCCGGC(5' stem) CATCGA(loop) GCCGGGC(3' stem) TTTTTCGTGGGGGAC(3' tail). Confidence: 100. opp_overlap 1293317 1293315

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685