Motif View

Internal ID 17845165
Source Database TransTermHP TERM 190
Feature Type terminator
Name
Rho-independent transcription terminator TERM 190
Sequence CCCGCGTACCCGCAAAGGACGCGGG
Look for more occurrences
Start 921232
End 921256
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa BL03 genomic scaffold adgeM-supercont1.1, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCGGGCATGAAAAAA(5' tail) CCCGCGT-CC(5' stem) TTTGCG(loop) GGTACGCGGG(3' stem) CCTCTGCCTCGACGC(3' tail). Confidence: 100. gap 1, opp_overlap 921188 921188

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685