Motif View

Internal ID 17844826
Source Database TransTermHP TERM 32
Feature Type terminator
Name
Rho-independent transcription terminator TERM 32
Sequence GCCCCGCGATAGCGGGGC
Look for more occurrences
Start 131093
End 131110
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa BL04 genomic scaffold adgfK-supercont1.5, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCCGGCAAGGAAAAA(5' tail) GCCCCGC(5' stem) TATC(loop) GCGGGGC(3' stem) TTTTTCGTGCAGGCC(3' tail). Confidence: 100. opp_overlap 131093

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685