Motif View

Internal ID 17843904
Source Database TransTermHP TERM 103
Feature Type terminator
Name
Rho-independent transcription terminator TERM 103
Sequence GCGCCGGGCGGCGCCCGGCGC
Look for more occurrences
Start 382863
End 382883
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa BL05 genomic scaffold adgfv-supercont1.2, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TGTGGCGGGAAGAAA(5' tail) GCGCCGGGC(5' stem) GCC(loop) GCCCGGCGC(3' stem) GGTGGGTTCATTCCG(3' tail). Confidence: 100. opp_overlap 382861 382858 382873

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685