Motif View

Internal ID 17843328
Source Database TransTermHP TERM 631
Feature Type terminator
Name
Rho-independent transcription terminator TERM 631
Sequence GGCGCCCACGGGCGCC
Look for more occurrences
Start 2875164
End 2875179
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa BL05 genomic scaffold adgfv-supercont1.1, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TTCCATACGACGAAA(5' tail) GGCGCC(5' stem) CACG(loop) GGCGCC(3' stem) TTTTTTCGTTTCCTC(3' tail). Confidence: 100. opp_overlap 2875164, overlap 2875156

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685