Motif View

Internal ID 17841844
Source Database TransTermHP TERM 50
Feature Type terminator
Name
Rho-independent transcription terminator TERM 50
Sequence GGGCCCGTTCGGGCCC
Look for more occurrences
Start 151668
End 151683
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa BL07 genomic scaffold adgfo-supercont1.2, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGGAACAATGAAAAA(5' tail) GGGCCC(5' stem) GAAC(loop) GGGCCC(3' stem) TTTTTCATTGCCGGA(3' tail). Confidence: 100. opp_overlap 151668, overlap 151661

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685