Motif View

Internal ID 17841273
Source Database TransTermHP TERM 156
Feature Type terminator
Name
Rho-independent transcription terminator TERM 156
Sequence CGCCGGGCTGATGCCCGGCG
Look for more occurrences
Start 859578
End 859597
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa BL07 genomic scaffold adgfo-supercont1.1, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCGCGCAATGAAAAA(5' tail) CGCCGGGC(5' stem) ATCA(loop) GCCCGGCG(3' stem) TTTTCGTTTCCGCCT(3' tail). Confidence: 100. opp_overlap 859573 859578

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685