Motif View

Internal ID 17837904
Source Database TransTermHP TERM 45
Feature Type terminator
Name
Rho-independent transcription terminator TERM 45
Sequence TGACCCGTCCGGCCCCGCCCGGCCGGGCGGGGCA
Look for more occurrences
Start 193300
End 193333
Strand -
Genomic Context Located within gene [Q065_03399]
Replicon Pseudomonas aeruginosa BL11 genomic scaffold adgfL-supercont1.2, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CAGCGTTCTCCACAA(5' tail) TGCCCCGCCCGGCC(5' stem) GGGCGG(loop) GGCCGGACGGGTCA(3' stem) ATCGGGACGGTTGGA(3' tail). Confidence: 91. overlap 193301

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685