Motif View

Internal ID 17837113
Source Database TransTermHP TERM 90
Feature Type terminator
Name
Rho-independent transcription terminator TERM 90
Sequence GCCCCGCGATGCGGGGC
Look for more occurrences
Start 742264
End 742280
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa BL12 genomic scaffold adgfc-supercont1.3, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AACGGCCAAGAGAAA(5' tail) GCCCCGC(5' stem) GAT(loop) GCGGGGC(3' stem) TTCTTCGTATTCGGG(3' tail). Confidence: 91. opp_overlap 742264

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685