Motif View

Internal ID 17835670
Source Database TransTermHP TERM 475
Feature Type terminator
Name
Rho-independent transcription terminator TERM 475
Sequence GGCCGCCTAGCGGCC
Look for more occurrences
Start 2066242
End 2066256
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa BL13 genomic scaffold adgfQ-supercont1.1, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TCGTTCTCCGGAAAA(5' tail) GGCCGC(5' stem) CTA(loop) GCGGCC(3' stem) TTTTTTGTTTTCTCC(3' tail). Confidence: 100. opp_overlap 2066242, overlap 2066235

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685