Motif View

Internal ID 17834595
Source Database TransTermHP TERM 444
Feature Type terminator
Name
Rho-independent transcription terminator TERM 444
Sequence CCCCGGGCCAGTCCCGGGG
Look for more occurrences
Start 1675659
End 1675677
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa BL14 genomic scaffold adggl-supercont1.1, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments ACGCAAAAAAGAAAA(5' tail) CCCCGGG(5' stem) ACTGG(loop) CCCGGGG(3' stem) TTCTCGTCGCGCTCG(3' tail). Confidence: 100. opp_overlap 1675659, overlap 1675654

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685