Motif View

Internal ID 17834570
Source Database TransTermHP TERM 402
Feature Type terminator
Name
Rho-independent transcription terminator TERM 402
Sequence CCGGTCCCTCGGGGCCGG
Look for more occurrences
Start 1583862
End 1583879
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa BL14 genomic scaffold adggl-supercont1.1, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCAGGCATAAAAAAA(5' tail) CCGGCCC(5' stem) CGAG(loop) GGACCGG(3' stem) TTTTCAACAGGTCGT(3' tail). Confidence: 100. opp_overlap 1583862, overlap 1583820

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685