Motif View

Internal ID 17834569
Source Database TransTermHP TERM 400
Feature Type terminator
Name
Rho-independent transcription terminator TERM 400
Sequence CCCGCGTACCCGCAAGGGACGCGGG
Look for more occurrences
Start 1583801
End 1583825
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa BL14 genomic scaffold adggl-supercont1.1, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCGTCGAGGCAGAGG(5' tail) CCCGCGTACCC(5' stem) GCAA(loop) GGG-ACGCGGG(3' stem) TTTTTTCATGCCCGG(3' tail). Confidence: 100. gap 1, opp_overlap 1583820

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685