Motif View

Internal ID 17833132
Source Database TransTermHP TERM 127
Feature Type terminator
Name
Rho-independent transcription terminator TERM 127
Sequence GCGGCCGGCGCCCGGTCGGCGCCGGTCGC
Look for more occurrences
Start 484876
End 484904
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa BL16 genomic scaffold adgeK-supercont1.3, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCGTCGACGGGAAAC(5' tail) GCGACCGGCGCC(5' stem) GACCG(loop) GGCGCCGGCCGC(3' stem) CGTTTCAGAAGTCCA(3' tail). Confidence: 91. opp_overlap 484875 484875, overlap 484875

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685