Motif View

Internal ID 17824670
Source Database TransTermHP TERM 261
Feature Type terminator
Name
Rho-independent transcription terminator TERM 261
Sequence GGCCGCATCCGCGGCC
Look for more occurrences
Start 1437826
End 1437841
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa BL24 genomic scaffold adgeY-supercont1.1, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCGCCCCGAAAAAAA(5' tail) GGCCGC(5' stem) ATCC(loop) GCGGCC(3' stem) TTTTTCATTTTTCAT(3' tail). Confidence: 100. opp_overlap 1437826, overlap 1437820

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685