Motif View

Internal ID 17823742
Source Database TransTermHP TERM 452
Feature Type terminator
Name
Rho-independent transcription terminator TERM 452
Sequence GGGCCGGCGCGAAATGCGTCGGCCC
Look for more occurrences
Start 1784881
End 1784905
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa M8A.1 genomic scaffold adgfk-supercont1.2, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GACGCCTGAAGCGAC(5' tail) GGGCCGGCGCG(5' stem) AAA(loop) TGCGTCGGCCC(3' stem) TTTTCGGAAAAAGGA(3' tail). Confidence: 95. opp_overlap 1784880

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685