Motif View

Internal ID 17812913
Source Database TransTermHP TERM 445
Feature Type terminator
Name
Rho-independent transcription terminator TERM 445
Sequence GGGCCGGCGCGAGGTGCGTCGGCCC
Look for more occurrences
Start 1818783
End 1818807
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa C52 genomic scaffold adgfp-supercont1.2, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GACGCCTGAAGCGAC(5' tail) GGGCCGGCGCG(5' stem) AGG(loop) TGCGTCGGCCC(3' stem) TTTTTCGGAAAAAGG(3' tail). Confidence: 100. opp_overlap 1818782

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685